Protein or peptide name: | ScRYMV |
Chromosome: | Rice yellow mottle virus satellite, complete genome |
Protein or peptide start site: | 3 |
Protein or peptide end site: | 218 |
ncRNA start site: | 3 |
ncRNA end site: | 218 |
Genome Browser: | NA |
Protein or peptide sequence: | MKETAAAKFERQHMDSPDLGTLVPRGSMGYLWIRIRARYPGRPGRLGAVHRASLWSEPGLQGAWRRNRSVGTTRTISHRAPAASSCAGGGDFVSSLTDTDEPRGTWRHPGISPGSTWAARSRAQGVAVERAWPPRGLEAKPVCWDHSDHQSSCSGSFQLRRGRRFCFEPYRHAKRNLEAPRNFTRVDLGGEPCTGRRCGASLASKGPGGETGLLGPLGPSVIVLRQL |
Protein or peptide length: | 227aa |
ncRNA type: | circRNA |
ncRNA name: | scRYMV |
Entrez ID: | 932238 |
Experimental species: | rice yellow mottle virus (sobemovirus) |
Experimental techniques: | MS/Western blotting/Immunoprecipitation |
Experimental sample (cell line and/or tissue): | E. coli |
Description: | The highly structured (64% GC) covalently closed circular (CCC) RNA (220 nt) of the virusoid associated with rice yellow mottle virus codes for a 16-kDa highly basic protein using novel modalities for coding, translation, and gene expression. |
Subcellular location: | NA |
Function: | This CCC RNA is the smallest among all known viroids and virusoids and the only one that codes proteins. |
Title of paper: | Novel coding, translation, and gene expression of a replicating covalently closed circular RNA of 220 nt |
PMID: | 25253891 |
Year of publication: | 2014 |